PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027860.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Nin-like
Protein Properties Length: 458aa    MW: 49654.4 Da    PI: 4.4064
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027860.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK47.43.9e-15353394849
      RWP-RK   8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 
                 e+l ++ +++ kdAAk L+++ T LKr CR+++ +RWP Rki
  Do027860.1 353 EHLINHVHMSKKDAAKALNISSTSLKRLCRKNNTNRWPGRKI 394
                 5677899**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.378337417IPR003035RWP-RK domain
PfamPF020424.9E-16353395IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSDEAYDPDG DVSRYLQTPL PESHLLAAPD DEPVPSHVGA PQDVPAVQMD VAAETPPLNP  60
DPAFVFPAPT NNVENHQSLT TMDMDVRPVQ AYGYPDDPVP APAVLASSDD PLPSLEPAFD  120
DSVLAHLETM SLSDEFMDDG EDEIEALIKS IKDAGSTDDI SSGVAEHTMP PFEDLTFVPF  180
VHGQLDCSNC RSAREVVHES DPGTFQHAIF DRSYISAEGE TILNELTYFD VEALKNNTTG  240
QLTKDSCSTF WAEAVSTSIS TPPANNDAHK ELEMNMLKEI FSAAAAPTEE AASQLAPEAP  300
HPATRAEEII NADPVILGSS QVISVQGGLF SASATGYSLL AKQRQRNPMF CAEHLINHVH  360
MSKKDAAKAL NISSTSLKRL CRKNNTNRWP GRKIIAIDKQ IKRLEEEAQR NVGTTGLLAY  420
MEKLEKLKTE KAQIYASFMK SILENGKHNG GAGPSGSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444338.11e-117uncharacterized protein LOC8070087
TrEMBLA0A1E5V4T50.0A0A1E5V4T5_9POAL; Uncharacterized protein
STRINGSi019769m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144291012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.11e-09NIN like protein 7