PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027748.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ZF-HD
Protein Properties Length: 398aa    MW: 40738.9 Da    PI: 7.4831
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027748.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.72.4e-3247100557
  ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                  +Y+eClkNhAaslGgha+DGCgEfmps++++ +++a+l+CaACgCHRnFHRr +
   Do027748.1  47 VYRECLKNHAASLGGHALDGCGEFMPSPEADpADPASLTCAACGCHRNFHRRLH 100
                  7******************************9*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-15798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.1E-274799IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.7E-304898IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.9984899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.96E-16223291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-28225292IPR009057Homeodomain-like
TIGRFAMsTIGR015656.0E-22233289IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEAMVDVKYR PAMFLNGGAA VAPAAAAAAK KMRPAAAAAW GAGDTGVYRE CLKNHAASLG  60
GHALDGCGEF MPSPEADPAD PASLTCAACG CHRNFHRRLH EAPPSPPLLA LPPPPPPLQP  120
AAAPSAAPPH VMRDSRAMRG EDEAPEDRVP GAFDDETDES DEGSDFDEDR PLSPLPAPSM  180
GPPGYLHAAP HMLFTLSTGA PGASIPAVAP RPPASLAPVP AVPGGAASAS AARKRFRTKF  240
SPEQKQRMQA LSERLGWRLQ KRDEAVVDES CREIGVTKGV FKVWMHNNKH NFVGGHSARR  300
SASASAAATA TGAAALHLPS PHAAAVLPSV HAAPPPAAAA VHPSSHAAPA APPAAPAPPP  360
PARVHADFNI NGTAAADDYF RVVKPATATA SGGSPQSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-212332911775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146009.11e-139ZF-HD homeobox protein
SwissprotQ6Z5281e-79ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLA0A1E5UJD20.0A0A1E5UJD2_9POAL; Zinc-finger homeodomain protein 9
STRINGGRMZM2G438438_P011e-138(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.18e-22homeobox protein 34