PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do027670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 230aa MW: 23529 Da PI: 9.8828 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.6 | 5e-37 | 29 | 85 | 3 | 59 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC+s ntkfCyynny+lsqPr+fC+aCrryWt+GGalrnvPvGg +rk Do027670.1 29 PEGLPCPRCESVNTKFCYYNNYNLSQPRHFCRACRRYWTRGGALRNVPVGGNTRKAT 85 57899*************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-22 | 31 | 82 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-32 | 32 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.658 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 34 | 70 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MEAGQVAEGG ALAVVATATG LRAGGGREPE GLPCPRCESV NTKFCYYNNY NLSQPRHFCR 60 ACRRYWTRGG ALRNVPVGGN TRKATPVARR KRTGGAPPAP ASPTAAPAPA LPPLTMLGTH 120 GALLRQYGLA FPAPALASPL AAVDPDRRLL DLGGSFSSLI AAAAPAPDVG VHFSAGFLVG 180 GLAPGLAHAP ASAAATLPPP PPPPPQQQQV SSQALPEGLI WSMGWPDLSI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do027670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818172.1 | 3e-83 | dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A1E5UJL3 | 1e-160 | A0A1E5UJL3_9POAL; Dof zinc finger protein DOF3.4 | ||||
STRING | Pavir.Ea00244.1.p | 8e-79 | (Panicum virgatum) | ||||
STRING | Sb03g003050.1 | 5e-79 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50410.1 | 8e-31 | OBF binding protein 1 |