PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027554.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 375aa    MW: 40060.8 Da    PI: 6.5136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027554.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-13107157255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Do027554.1 107 KTSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 157
                 799*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.818105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-17106181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-14107161No hitNo description
Gene3DG3DSA:4.10.280.105.7E-14107169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-11107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAEALCDQLF SDVDGELMMH QPSDADDLFG ILEAWEDCVT GGNSTPRGAE VPQANDAATP  60
KLAAVGKVRR LVDRPEDAMV PAPKRQRCSP AVSSDAAATS EDGAANKTSH ITVERNRRKQ  120
MNEHLAVLRS LMPCFYVKRG DQASIIGGVV DYIKELQQVL QSLEAKKQRK SYTDQVLSPR  180
PLACCSPRPP LSPRPPLPLK STPPISPRPS VPISPRTPPA PGSPYKLCRQ PPLLPLPLSP  240
PGSAYSSPAM TPTREPNPAS SYLPSLDTIA AELCAYAATN KQQRAALPAA AGGELLPDVK  300
VEFAGANLVV KTVSHRAPGQ AVKLIAALEG RSLEILDAKI STVDDTAVNS FTIKIGIECE  360
LSAEELVQEI QQAFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0933902e-90FP093390.1 Phyllostachys edulis cDNA clone: bphyem213c13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813040.10.0transcription factor SPEECHLESS-like
TrEMBLA0A1E5UP880.0A0A1E5UP88_9POAL; Transcription factor SPEECHLESS
STRINGSi006640m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-40bHLH family protein