PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027512.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 398aa    MW: 45207.1 Da    PI: 4.7079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027512.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS120.42.2e-37189378185373
        GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesv..sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                 r +++ le+++++p E+l+    ++  +l+d+s   ++++++d+vL+ +++++P+v++ +  +    s+sF +rf e l yy+alfd+lea+ p+ese 
  Do027512.1 189 RSKAVCLEDFKTDPSEVLVLIDLFNSSTLMDKSIffDMPNPKDTVLNNIRKMQPNVFIQSIVNWTS-STSFQTRFREVLFYYTALFDMLEATTPPESES 286
                 5567788999********************9996336778****************9988888765.99****************************** PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 r ++E+ ++gr++ n++ace  +   r e++ +W+ r ++aG++++pl+ ++++++   + k + + + + +++++l++gWk+r L++ S W
  Do027512.1 287 RLVLEQGMFGRSALNIIACECLDPMDRPENYTQWQVRNQSAGLRQLPLKPSIVQEVMENVMKLHHKDFLLGQDNDWLIQGWKGRVLFAQSTW 378
                 ******************************************************9998888888788************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.4521359IPR005202Transcription factor GRAS
PfamPF035147.7E-35189378IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MLCHNPQNGC ELTTPAEVQQ SFSQIISSDS FGNNNVNIGM IASPAVSEGT ENGSIDVANC  60
LLQGSNGDQI SSNFDTDVVE AFLKGVEEAS RFLPKYSGYN KDKLVDKIFH GSSNSRGQKK  120
RYSREEHLDN DEVGRINKVL MPVTMPYETS PDEVFNEMML SGYETCKEDM DKLRGSMIIE  180
VVKTNRNGRS KAVCLEDFKT DPSEVLVLID LFNSSTLMDK SIFFDMPNPK DTVLNNIRKM  240
QPNVFIQSIV NWTSSTSFQT RFREVLFYYT ALFDMLEATT PPESESRLVL EQGMFGRSAL  300
NIIACECLDP MDRPENYTQW QVRNQSAGLR QLPLKPSIVQ EVMENVMKLH HKDFLLGQDN  360
DWLIQGWKGR VLFAQSTWVA EDLHHSDYLT ISFVKLFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027512.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791279.18e-86scarecrow-like protein 33
TrEMBLA0A1E5VA620.0A0A1E5VA62_9POAL; Scarecrow-like protein 9
STRINGPavir.Hb00038.1.p2e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2543445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-51GRAS family protein