PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027492.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 289aa    MW: 32949.4 Da    PI: 5.8949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027492.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.71.4e-0878121149
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                 s+y+GVr ++ +grW AeIr p     +k+     ++t+eeAa+ + a 
  Do027492.1  78 SRYRGVRLRE-SGRWQAEIRNPL----TKKREYSLHDTEEEAAATYQAK 121
                 79*******9.7*********73....344444689**9***9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-878127IPR016177DNA-binding domain
CDDcd000182.46E-1378118No hitNo description
PROSITE profilePS5103212.53679135IPR001471AP2/ERF domain
SMARTSM003804.6E-479139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1079126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLRSRKMPLM RKVRIICYDP DATDSSSDED DQNPKKQKKI IREVLVPVNK YKTSKPLKPT  60
MPCGIRDLNG PESKVRSSRY RGVRLRESGR WQAEIRNPLT KKREYSLHDT EEEAAATYQA  120
KWNQFRAEML AMKAQPSMSE HAALSNSSLV SCVSSSVSCE QKTQEAHYRV GSLMEIHREP  180
MDESLLNFLP KPMEISEDVM LNQKDGHPIS HSVSPANERP LDGFTRPEDM FTVSDFIGAT  240
YKPLDDDYIG LADISHLPLP MKDPEFNLDA ELDWSGFDFA SMEHGLELL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027492.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0386699e-34BT038669.1 Zea mays full-length cDNA clone ZM_BFb0307D12 mRNA, complete cds.
GenBankBT0612689e-34BT061268.1 Zea mays full-length cDNA clone ZM_BFb0128H07 mRNA, complete cds.
GenBankBT0686299e-34BT068629.1 Zea mays full-length cDNA clone ZM_BFb0353E24 mRNA, complete cds.
GenBankKJ7275529e-34KJ727552.1 Zea mays clone pUT5412 AP2-EREBP transcription factor (EREB94) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956541.11e-161ethylene-responsive transcription factor ERF118
RefseqXP_004956542.11e-161ethylene-responsive transcription factor ERF118
RefseqXP_004956543.11e-161ethylene-responsive transcription factor ERF118
RefseqXP_004956544.11e-161ethylene-responsive transcription factor ERF118
RefseqXP_012698904.11e-161ethylene-responsive transcription factor ERF118
RefseqXP_022679546.11e-161ethylene-responsive transcription factor ERF118
TrEMBLA0A1E5UMW50.0A0A1E5UMW5_9POAL; Uncharacterized protein
STRINGSi030706m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-13ERF family protein