PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do027366.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 402aa MW: 42840.1 Da PI: 10.7189

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do027366.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	74.7	1.3e-23	2	44	13	55
G2-like 13 rFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Do027366.1 2 AFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 44 6*****************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.715	1	47	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.5E-16	2	46	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.53E-8	2	45	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.2E-20	2	45	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MAFVHAVERL GGQERATPKL VLQMMNVRGL SIAHVKSHLQ MYRSKKLDHE SGHERSAISS 60 VFSPMDFHMR RGDHRFHDMF FQRAAGSAIS SRLLPNGGFF GSRNAVSPEA SRLFGLLQRR 120 QPAVQTFDFK NYSSLRNQEW TFSQHAAAAA RAGAINDHGP AKGLIHDMIF RKDGKPTSHL 180 FDVRDAIASN RTSSAAAGAA DHGGRVGSSD WIGSSSRPLS RTMSAAASAG FALGSLHLLS 240 RGRGAAGSNG YHPNGDANTT SSDPVVSREA LGSRLETQLE AKNRTKVIGE MRNGTSAKRM 300 KTSMEENGGT PELQLSLSPN VGGDADKAKK RKILSIALSE QEVESDKMLP LSLSLSLRGG 360 DSGGEGSGGD AGRLDTVTGS SSKKAALGLS TLDLTMSIKA LE

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MAFVHAVERL GGQERATPKL VLQMMNVRGL SIAHVKSHLQ MYRSKKLDHE SGHERSAISS  60
VFSPMDFHMR RGDHRFHDMF FQRAAGSAIS SRLLPNGGFF GSRNAVSPEA SRLFGLLQRR  120
QPAVQTFDFK NYSSLRNQEW TFSQHAAAAA RAGAINDHGP AKGLIHDMIF RKDGKPTSHL  180
FDVRDAIASN RTSSAAAGAA DHGGRVGSSD WIGSSSRPLS RTMSAAASAG FALGSLHLLS  240
RGRGAAGSNG YHPNGDANTT SSDPVVSREA LGSRLETQLE AKNRTKVIGE MRNGTSAKRM  300
KTSMEENGGT PELQLSLSPN VGGDADKAKK RKILSIALSE QEVESDKMLP LSLSLSLRGG  360
DSGGEGSGGD AGRLDTVTGS SSKKAALGLS TLDLTMSIKA LE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do027366.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243223	1e-137	AC243223.1 Panicum virgatum clone PV_ABa006-H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965558.1	0.0	uncharacterized protein LOC101779064
TrEMBL	A0A1E5V9V6	0.0	A0A1E5V9V6_9POAL; Uncharacterized protein
STRING	Pavir.Db01175.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2754	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-23	G2-like family protein