PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027273.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 424aa    MW: 46983.5 Da    PI: 4.7081
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027273.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.21e-4661531129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....................kvkaeekewyfFskrdkkyatgkrknrat 78 
                 lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp                      ++++++  wyfF++rd+ky++g r+nr+t
  Do027273.1   6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAITEIDLYKFAPWDLPDdrslncsdgllllvllliekaSLESNDLVWYFFCPRDRKYSSGLRTNRST 103
                 79****************************.89**************95589***********999986655556669********************* PP

         NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                   gyWkatgkd++v+  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  Do027273.1 104 GVGYWKATGKDRPVVY-NSRTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 153
                 ****************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-553175IPR003441NAC domain
PROSITE profilePS5100552.5276175IPR003441NAC domain
PfamPF023651.4E-257152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAITE IDLYKFAPWD LPDDRSLNCS  60
DGLLLLVLLL IEKASLESND LVWYFFCPRD RKYSSGLRTN RSTGVGYWKA TGKDRPVVYN  120
SRTVGMKRTL VFHLGKPPRG DRTDWVMYEY RLEDEELAAS GVKLDACVLC KIFQKSGPGP  180
KIGAQYGAPF NEEDWNDASN LECSPLPPSV APCAPESSQG GLNSAGQHLA VSCHGKVYLS  240
PFSESSDEHA VNHVHPDRPS PNIPIDSIHI QLLTEIIRCS STNHLCTAAE DDSLPDSTAG  300
YDNEDGVSLD DIETIFCEVD ELASRSVVDN SNHCDLREHL IHPMLEARGT EHYLELNDLS  360
FSLADGSDSC GMLLSNDISV EHPFDLGPRF EQDSLDYISN TVNTSTSTTA GSFPSVPAVD  420
EHRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-47217611169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027273.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823524.10.0NAC domain-containing protein 82-like
RefseqXP_025823525.10.0NAC domain-containing protein 82-like
RefseqXP_025823526.10.0NAC domain-containing protein 82-like
RefseqXP_025823527.10.0NAC domain-containing protein 82-like
TrEMBLA0A1E5VR860.0A0A1E5VR86_9POAL; NAC domain-containing protein 82
STRINGPavir.J14942.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148561721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.47e-77NAC domain containing protein 82