PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027242.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 256aa    MW: 28132.7 Da    PI: 6.4256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027242.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.15.1e-091964252
         AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkk 52
                +y+GV   + +g+W+A+I    + +g  ++f lg fgta  Aa a+++a ++
  Do027242.1 19 QYRGVAMLP-DGKWRAYIV---NrDG--QSFDLGEFGTATAAALAHDRAILS 64
                69*******.9******54...4343..*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.0231978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-111978IPR001471AP2/ERF domain
CDDcd000186.43E-121980No hitNo description
SMARTSM003802.4E-51984IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-91977IPR016177DNA-binding domain
PfamPF008478.3E-62063IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MATTEVAAAR TPTPAAAVQY RGVAMLPDGK WRAYIVNRDG QSFDLGEFGT ATAAALAHDR  60
AILSVLGSST SAAVLNFRAA FSDTELRFLR GRHAPARPAG VVAMVRLSGD GSYDTELSQF  120
AARAFDAYMD PELAFDVATF RLAHNDVLHR LKEKAAIAAG TNANQATRDK AMMDAEREAF  180
VQATKNKATD EVWVDSYHRR RQQIGHIFED ENRWPLVLPV TDVHVDWSPG EELIYLPHGS  240
SHIDEMIMGN SMIKKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027242.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UKQ20.0A0A1E5UKQ2_9POAL; Uncharacterized protein
STRINGSi039445m1e-144(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150581718