PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do027187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21114.8 Da PI: 4.5365 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+Wv+eIr+p gk++r++lg+f +ae+Aa a++ a+++l+g Do027187.1 19 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESAEMAAVAHDVAALRLRG 68 69****999.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.8E-37 | 19 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.12E-31 | 19 | 76 | No hit | No description |
PROSITE profile | PS51032 | 23.617 | 19 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-22 | 19 | 76 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 19 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-11 | 20 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEVVLDNVNG VAAGDVAGQY RGVRKRKWGK WVSEIREPGK KTRIWLGSFE SAEMAAVAHD 60 VAALRLRGRE ARLNFPGIVH HFRRPATAEP DDVRAAALEA AAQVRFRPDL VMQPGGDSDD 120 SCGGSAGSPD LMLGDDVAWD VLLGTDELAP ESPKMWAELA EAMLMAPPVW EGSMVDNDEW 180 AQGNLWDLPV WHC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-17 | 19 | 76 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-17 | 19 | 76 | 5 | 63 | ATERF1 |
3gcc_A | 3e-17 | 19 | 76 | 5 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do027187.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972681 | 5e-93 | EU972681.1 Zea mays clone 385859 CBF-like protein mRNA, complete cds. | |||
GenBank | KJ727511 | 5e-93 | KJ727511.1 Zea mays clone pUT5370 AP2-EREBP transcription factor (EREB106) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828349.1 | 1e-111 | ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A0A1E5VJX2 | 1e-136 | A0A1E5VJX2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J22217.1.p | 1e-109 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 3e-19 | ERF family protein |