PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do027166.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 307aa MW: 32521.9 Da PI: 8.2751

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do027166.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	243	288	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+Ik Lq Do027166.1 243 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 288 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.723	237	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-16	240	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.91E-13	241	292	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-14	242	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-10	243	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	243	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MRRFLPGGGG EPSSSSSSGG PHHPHGELAG ERGAAGLRYG GGDISLGHGH HGDGGHRHHH 60 QLGGDAERQQ DGSMDMLARH SSSPAGFFSN LMVDNGYPSS KAGGSGGAGA EAHHPSTASG 120 SGRKMKPSQL NFTRPQQGGH LSQISEDGAF PAGLAGDRAV HSGESSGCGA SARSFSGGFS 180 IVGPWEESRD IISTLGAYDS QYSGAMAGTA LEMAGMDRYM QLQQDQVPFK VRAKRGCATH 240 PRSIAERERR TRISEKLRKL QELVPNMDKQ TSTADMLDLA VEHIKGLQSE LQTLKHEQEK 300 CTCCRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do027166.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954725	1e-126	EU954725.1 Zea mays clone 1479278 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808991.1	1e-146	transcription factor bHLH128-like
Swissprot	Q8H102	4e-52	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A1E5USQ6	0.0	A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRING	Pavir.Ab02229.1.p	1e-144	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	3e-49	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]