PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do027134.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 292aa MW: 33019.7 Da PI: 9.5007

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do027134.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	149	168	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + Cp C k+Fsr nL+ H+ Do027134.1 149 FACPVCCKTFSRYNNLQMHM 168 78*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.2E-5	140	171	No hit	No description
PROSITE profile	PS50157	10.284	149	176	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.8E-7	149	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	151	171	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.265	253	289	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MASPYTFLSR PHIEHHFSFQ TSLVSPSPPP FTKEALPLLS LLPPSHDYNH GRNNSDQQGK 60 KEEGVMEDVE IKLRIGPPSP NHDSPLNLAK SATVAVAGDK KMEEYEELGS EGGIAGDGRC 120 SEYFAIGKLT KGNYWIPTPA HILFGPTLFA CPVCCKTFSR YNNLQMHMWG HGSQYRRGPD 180 SLRSVQPAAM LRLPCFCCAP GCRNHVDHPR ARPLKDFRTL QTHYRRRHCA RPFLCRRCGK 240 ALAVRGDWRT HEKNCGRRWR CTCGSDFKHK RSLKDHVRAF GRGHVEEHPP AS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do027134.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357467	1e-154	AK357467.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1054C05.
GenBank	AK359410	1e-154	AK359410.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096E11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801470.1	1e-167	zinc finger protein WIP2-like
Swissprot	Q8W030	1e-100	ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBL	A0A1E5UL11	0.0	A0A1E5UL11_9POAL; Zinc finger protein WIP2
STRING	Pavir.Ba02648.1.p	1e-175	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-99	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]