PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do027099.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 81aa MW: 8910.99 Da PI: 4.1469 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 29 | 2.9e-09 | 1 | 32 | 61 | 92 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlka 92 +++eA++r++dPvyG++gvi +lqq+++ ++ Do027099.1 1 MMMEARWRMQDPVYGCTGVIDRLQQEIRAVRP 32 589************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.0E-6 | 1 | 31 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MMMEARWRMQ DPVYGCTGVI DRLQQEIRAV RPPRAAAPAS SETRTGCAVV VHAGAHGITV 60 NEEEDEEAPL MDPDEFLDLD G |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do027099.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444738.2 | 3e-12 | LOB domain-containing protein 24 | ||||
TrEMBL | A0A1E5VF28 | 1e-52 | A0A1E5VF28_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.Cb01140.1.p | 2e-18 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |