PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027054.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 340aa    MW: 37177.7 Da    PI: 8.1856
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027054.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.14.9e-5191411129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
                 lppGfrF P+dee++++yL +kv+++++++  +i e+d++++ePw+Lp + + +ekewy F+k+d+ky+tg+r+nrat+ gyWkatgkdke++++    
  Do027054.1   9 LPPGFRFYPSDEEIITFYLMPKVHQRNFTC-AAIGEADLNRTEPWELPGMENMGEKEWYCFFKKDRKYPTGTRTNRATEGGYWKATGKDKEIYRAvagl 106
                 79**************************99.88***************76677999**************************************87655 PP

         NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                    +l+g+kktLvfykgrap+gektdWvmhe+rle
  Do027054.1 107 vVPRLIGMKKTLVFYKGRAPRGEKTDWVMHEFRLE 141
                 55555***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-576180IPR003441NAC domain
PROSITE profilePS5100554.7959180IPR003441NAC domain
PfamPF023652.1E-2510140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSGGGDLKLP PGFRFYPSDE EIITFYLMPK VHQRNFTCAA IGEADLNRTE PWELPGMENM  60
GEKEWYCFFK KDRKYPTGTR TNRATEGGYW KATGKDKEIY RAVAGLVVPR LIGMKKTLVF  120
YKGRAPRGEK TDWVMHEFRL ENNDKFPCPT SCSTSSSSST TTVKSSTSKD QWVVCRVSLK  180
NTGIKKAPAP PPYHMVAAGG EIDQSSIPIP MPMPLQFPML PDFTMDPASS YYSTAGARSS  240
LVPPMMPPMA DMGSATGLHI NSTLFGNPMS MASSVSFFPQ IGMAAAGSSA FMAAPESIPS  300
SMVLQKDTGM RPSQTKVAEI SSMVFAAPDS AGTIDMDDIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44718615171NO APICAL MERISTEM PROTEIN
1ut4_B2e-44718615171NO APICAL MERISTEM PROTEIN
1ut7_A2e-44718615171NO APICAL MERISTEM PROTEIN
1ut7_B2e-44718615171NO APICAL MERISTEM PROTEIN
3swm_A2e-44718618174NAC domain-containing protein 19
3swm_B2e-44718618174NAC domain-containing protein 19
3swm_C2e-44718618174NAC domain-containing protein 19
3swm_D2e-44718618174NAC domain-containing protein 19
3swp_A2e-44718618174NAC domain-containing protein 19
3swp_B2e-44718618174NAC domain-containing protein 19
3swp_C2e-44718618174NAC domain-containing protein 19
3swp_D2e-44718618174NAC domain-containing protein 19
4dul_A2e-44718615171NAC domain-containing protein 19
4dul_B2e-44718615171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027054.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682349.11e-146protein CUP-SHAPED COTYLEDON 1
RefseqXP_025801540.11e-146NAC domain-containing protein 79-like
SwissprotQ9FLJ21e-68NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1E5UPV00.0A0A1E5UPV0_9POAL; NAC domain-containing protein 100
STRINGSi002074m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-68NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]