PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do026995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 22958.3 Da PI: 4.6984 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.4 | 7.2e-05 | 136 | 160 | 5 | 29 |
HHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 5 hnerErrRRdriNsafeeLrellPk 29 h +rEr+RR+++ ++++ L ++ Do026995.1 136 HMMRERQRREKLSQSYADLYAMIAA 160 889****************998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.51E-5 | 126 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MQMDSYFYTG CFHDEAPFNP HGAVPPSPEL PFGLIASPGE PEPPFAAPPP QALGPTAFQD 60 YCGAGPEMMP QSSVGAGEPH HGSGAGANVH MRVVGALGTM GGDPEQDQAM GEVEEEPRQR 120 QQPGGGAVES SRGFRHMMRE RQRREKLSQS YADLYAMIAA GEVEKAVEEA LMQEVERKQQ 180 HPEAGSGGPG FPGTSPSSSS GRGWGPQASS SHVQNVF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do026995.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU943647 | 4e-32 | EU943647.1 Zea mays clone 1671614 mRNA sequence. | |||
GenBank | EU955623 | 4e-32 | EU955623.1 Zea mays clone 1539864 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. | |||
GenBank | KJ726793 | 4e-32 | KJ726793.1 Zea mays clone pUT2279 bHLH transcription factor (bHLH103) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794972.1 | 1e-67 | transcription factor BHLH148-like | ||||
Swissprot | Q75KV9 | 2e-25 | BH148_ORYSJ; Transcription factor BHLH148 | ||||
TrEMBL | A0A2S3II72 | 3e-66 | A0A2S3II72_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia00623.1.p | 2e-63 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5940 | 34 | 50 |
Publications ? help Back to Top | |||
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