PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do026803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NF-YC | ||||||||
Protein Properties | Length: 195aa MW: 21738.4 Da PI: 4.7172 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.5 | 3.3e-14 | 22 | 111 | 9 | 99 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++e++ +f+nh lP+ i + + m+s+++P +l+k ++fi elt+r+ + a + +r+t+ +i +++++ + + fl d+ pr+ Do026803.1 22 RLENTVNFNNHILPVL-FAEISRDTKGSFMMSSDTPPVLTKLLDIFIQELTVRASMCATSHDRSTILEPNIYEVINSHESYVFLNDVLPRH 111 5799**********96.567888999999***********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.92E-10 | 48 | 110 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.2E-10 | 49 | 110 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDCEQHLCHH CNNKNLMSFG GRLENTVNFN NHILPVLFAE ISRDTKGSFM MSSDTPPVLT 60 KLLDIFIQEL TVRASMCATS HDRSTILEPN IYEVINSHES YVFLNDVLPR HGTNPNRPSM 120 SSNSPQLLQE SLVATSILIE NGPTDPCNKS GEQDFQFSKD NLVPTINAQP NPMELKNEDL 180 NNMSATSSGS IEETK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do026803.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450581.1 | 5e-39 | uncharacterized protein LOC8071541 | ||||
TrEMBL | A0A1E5V3J5 | 1e-141 | A0A1E5V3J5_9POAL; Uncharacterized protein | ||||
STRING | Si026839m | 6e-69 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17894 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-10 | nuclear factor Y, subunit C2 |