PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026588.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 241aa    MW: 24699.5 Da    PI: 7.5843
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026588.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20116150135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Do026588.1 116 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 150
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-19110163IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.404110146IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-14111151No hitNo description
Gene3DG3DSA:3.30.50.102.7E-17114150IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-13115147No hitNo description
PROSITE patternPS003440116141IPR000679Zinc finger, GATA-type
PfamPF003205.4E-18116150IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFAAAAD HHHYYRHCGG DGEAYGSGHY GGSVDCTLSL  60
GTPSTRRAEA GARAPAAPSG GLHWEAPVPS CNGRQQQESA AARVPAEANA SGARRCANCD  120
TTSTPLWRNG PRGPKSLCNA CGIRYKKEER RAAAAAVAPA ASALASDGGA EYASSYGYAR  180
QPQQWGCYGP AAVAKAASYG MFGDAGGEVD GPCLPWGLGV MPSPSPAFGA VREMPSLFQY  240
Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026588.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969380.11e-117GATA transcription factor 15-like
TrEMBLA0A1E5VS131e-171A0A1E5VS13_9POAL; Uncharacterized protein
STRINGSb03g030310.11e-106(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.17e-25GATA transcription factor 19