PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026506.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 584aa    MW: 65058.5 Da    PI: 7.121
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026506.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS55.31.3e-17792226306
        GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegae..rr 306
                 ++L + + l Pk+v v+eq+a+hn++sF +rf+eal y   l+dsl+a +++      er+ vEr++lg+ei+ ++ +ega+  r+
  Do026506.1   7 SFLAAARALLPKIVLVTEQDANHNGASFRKRFAEALGYDGDLYDSLDAAAAAYRrpaAERAEVERAVLGEEIRGALLHEGAHpaRT 92 
                 69********************************************777554434559*********************9983344 PP
2GRAS316.65.1e-971465582374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v +L+ecA +v +g++e+++  L++++ l+s  + p+qRl   f+  La+rl+   ++ + al +ps+    ++s+  +a++ f ++sP++  +++t N
  Do026506.1 146 VPALYECAAHVIEGSFEKTDISLSQIKSLSSIVDGPLQRLSLIFADSLARRLLCPIQGFAGALiHPSDYF--EQSSLQSARCSFTDLSPYIHTGFVTIN 242
                 668***************************************************9999988874555554..46666678999**************** PP

        GRAS 100 qaIleavegeervHiiDfdi..sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.. 194
                 +aIlea+e e+ vHiiD++   s++ QW+ Ll+ +  R++gpp++R+T+v++    +++ l +++  L++ A++l++pf+f+  v  rle+l++++L  
  Do026506.1 243 RAILEAMEVEKVVHIIDLSCstSHPRQWLKLLHDFHRRQGGPPEVRLTVVND----DNDFLANMQMLLSNEADKLKIPFQFKS-VIGRLETLDFSNLrd 336
                 ******************86226899**************************....9**************************.799999999998855 PP

        GRAS 195 ..rvkpgEalaVnlvlqlhrll.....................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                   ++k gEa+a++++lq+hrll                                     + + ++++  +++L++v++l+P+++ ++eq+a+hn+  F 
  Do026506.1 337 tlEIKYGEAIAISCSLQMHRLLladdsatcsgigqlqkmasiaqlkqmassvyspvstlSPQCQTPKLLTSFLNAVRGLKPNIMLLMEQDANHNALLFC 435
                 557888**************************************************998667777778889**************************** PP

        GRAS 255 erflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                 +rf+eal+yy+alfds++a     pr+++er+ vEr++lg+ei+n++ ceg +r erhe+l++W + ++++GF+ vpls +a  + k+ l  ++ d+ +
  Do026506.1 436 DRFMEALNYYAALFDSFHAVaaaNPRKADERARVERMILGEEIKNILVCEGVHRHERHERLSQWAMHMDRSGFEHVPLSFHAIWEGKTKLMSFGLDERQ 534
                 ****************955412257777******************************************************************999** PP

        GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                  + e+++l+l+W +  L+s+SaWr
  Do026506.1 535 GKVENDCLLLCWGSTHLYSISAWR 558
                 ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.6E-15792IPR005202Transcription factor GRAS
PROSITE profilePS5098544.113119538IPR005202Transcription factor GRAS
PfamPF035141.8E-94146558IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MPPPLVSFLA AARALLPKIV LVTEQDANHN GASFRKRFAE ALGYDGDLYD SLDAAAAAYR  60
RPAAERAEVE RAVLGEEIRG ALLHEGAHPA RTARPAAAVG DAHGAGRVPE QKLLKLRPPE  120
HYLNIPRVMY RPSVQDQGTV DQAQLVPALY ECAAHVIEGS FEKTDISLSQ IKSLSSIVDG  180
PLQRLSLIFA DSLARRLLCP IQGFAGALIH PSDYFEQSSL QSARCSFTDL SPYIHTGFVT  240
INRAILEAME VEKVVHIIDL SCSTSHPRQW LKLLHDFHRR QGGPPEVRLT VVNDDNDFLA  300
NMQMLLSNEA DKLKIPFQFK SVIGRLETLD FSNLRDTLEI KYGEAIAISC SLQMHRLLLA  360
DDSATCSGIG QLQKMASIAQ LKQMASSVYS PVSTLSPQCQ TPKLLTSFLN AVRGLKPNIM  420
LLMEQDANHN ALLFCDRFME ALNYYAALFD SFHAVAAANP RKADERARVE RMILGEEIKN  480
ILVCEGVHRH ERHERLSQWA MHMDRSGFEH VPLSFHAIWE GKTKLMSFGL DERQGKVEND  540
CLLLCWGSTH LYSISAWRPY KGSTSGSRDH MLVQPQRQII GPNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-3715155925380Protein SCARECROW
5b3h_A9e-3715155924379Protein SCARECROW
5b3h_D9e-3715155924379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826866.10.0scarecrow-like protein 3
TrEMBLA0A1E5UMT10.0A0A1E5UMT1_9POAL; Scarecrow-like protein 3
STRINGPavir.J24605.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-84scarecrow-like 3