PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do026472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25405.4 Da PI: 4.7697 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 3 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +g W+++Ede+l+ ++ +G gt +++a+ g ++R++k+c++rw +yl Do026472.1 3 KGLWSPDEDERLYSHITNYGVGTCSSVAELSGtynwLKRSGKSCRLRWMNYL 54 678***********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 60 | 103 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r + +++E++++v + k+lG++ W++Ia++m+ gRt++++k++w++ Do026472.1 60 REPISKQEEDRIVSLQKLLGNK-WSAIAARMP-GRTDNEIKNYWNS 103 567799****************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.634 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 8.0E-7 | 2 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.29E-23 | 2 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-10 | 3 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-16 | 4 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.52E-6 | 6 | 54 | No hit | No description |
PROSITE profile | PS51294 | 21.725 | 55 | 109 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-13 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 61 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 62 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.42E-10 | 62 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MRKGLWSPDE DERLYSHITN YGVGTCSSVA ELSGTYNWLK RSGKSCRLRW MNYLQPGLRR 60 EPISKQEEDR IVSLQKLLGN KWSAIAARMP GRTDNEIKNY WNSRIKKKLK RMGASNYNST 120 EMCPTEEKGA DSNTDGGDLD LYTQATMEGQ VDESMTNINS GDDPSPQLPV FACQLLPDPY 180 ATIQSGERTE QSSLNVSFAK SYEINFKEEY VDFLVCLSDD LPEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-23 | 1 | 109 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do026472.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727821 | 1e-66 | KJ727821.1 Zea mays clone pUT5773 MYB-related transcription factor (MYBR4) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448905.2 | 6e-95 | transcription factor MYB57 | ||||
Swissprot | P20027 | 2e-44 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A1E5UMZ9 | 1e-166 | A0A1E5UMZ9_9POAL; Myb-related protein Hv33 | ||||
STRING | Sb05g001215.1 | 2e-65 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 4e-46 | myb domain protein 61 |