PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026369.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 392aa    MW: 42016.9 Da    PI: 10.6172
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026369.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31326384259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Do026369.1 326 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 384
                 69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.8E-17279323IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.7E-34313385IPR003657WRKY domain
PROSITE profilePS5081129.757320386IPR003657WRKY domain
SuperFamilySSF1182908.63E-27323384IPR003657WRKY domain
SMARTSM007742.5E-38325385IPR003657WRKY domain
PfamPF031068.7E-27327383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEEANRAAVE SCHRVLALLS NPHGQLVPHK DLVAATGEAV AKFGSLTTKL SNGNGLQGHA  60
RVRKIKKPLP IFDSNLFLES SAVAAAAATT AAKAPSASPI TGLQLFPRYH QMEGSSSKDP  120
VRIPTQFPKR LLLENPAAGL EGQSAQGPPV HMVQPVSVAP PAGTPTPALP AAHLHFIQQQ  180
QSYQRFQLMQ QMKIQSEMMK RSNLGDQSGS LSGGGSGAKG VNLKFDSSNC TASSSRSFLS  240
SLSMEGSLAS LDGSRASRPF QLVSGSQASS TPELGLVQRR RCTGREDGTG RCATGSRCHC  300
SKKRKLRIRR SIKVPAISNK VADIPADEFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR  360
KHVERCVDDP SMLIVTYEGD HNHNRVLAQP AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-193233841272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9406800.0AY940680.1 Zea mays WRKY1 mRNA, complete cds.
GenBankBT0839930.0BT083993.1 Zea mays full-length cDNA clone ZM_BFb0063A21 mRNA, complete cds.
GenBankEU9561730.0EU956173.1 Zea mays clone 1558475 WRKY transcription factor 21 mRNA, complete cds.
GenBankHQ8587900.0HQ858790.1 Zea mays clone UT1804 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796671.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A1E5V3N80.0A0A1E5V3N8_9POAL; Protein WRKY1
STRINGPavir.Ia00625.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-51WRKY DNA-binding protein 21