PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026314.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 284aa    MW: 30614.7 Da    PI: 8.0746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026314.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19110159255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+++taeeAa a++ a+ +l+g
  Do026314.1 110 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEEAALAYDGAAFRLRG 159
                 59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-30109169No hitNo description
SuperFamilySSF541712.35E-22110168IPR016177DNA-binding domain
SMARTSM003804.7E-36110173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-32110168IPR001471AP2/ERF domain
PROSITE profilePS5103223.314110167IPR001471AP2/ERF domain
PfamPF008475.2E-14111159IPR001471AP2/ERF domain
PRINTSPR003675.1E-11111122IPR001471AP2/ERF domain
PRINTSPR003675.1E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTTAMDRQWR RLHATASTSK LLAPPPPLGA VEYRELIQAL ATPVQAAPAV PFMVDTEQSP  60
SMAVGTSCYH LITPAQAAFY YSVIGRLGPA PRVMKRYYGV AAPAAAMAKL YRGVRQRHWG  120
KWVAEIRLPR NRTRLWLGTY DTAEEAALAY DGAAFRLRGD AARLNFPELR RGGRHHAPPL  180
HPTVDAKLQA VTSAPAPASP QPESADIKNE PGCCSGSEAS TTTTAADGPD LSPSSTGSSS  240
LVKAAPPLPE MQQLDFSEAP WDEADGVALR KYPSLEIDWD AILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-20106167163ATERF1
3gcc_A7e-20106167163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026314.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0984945e-94FP098494.1 Phyllostachys edulis cDNA clone: bphyem124a13, full insert sequence.
GenBankKJ7275155e-94KJ727515.1 Zea mays clone pUT5374 AP2-EREBP transcription factor (EREB112) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983222.11e-164ethylene-responsive transcription factor RAP2-13
TrEMBLA0A1E5UNC70.0A0A1E5UNC7_9POAL; Ethylene-responsive transcription factor RAP2-13
STRINGSi036893m1e-163(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-37ERF family protein