PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do026240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GeBP | ||||||||
Protein Properties | Length: 260aa MW: 27432.3 Da PI: 10.1207 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 34.6 | 5.1e-11 | 48 | 143 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdqkifelskkiWg 97 r+wse De+ +L Gl +a +g+ p + ++ +++++ +++ eK+rrL+ K+ + ++ + ++ +els iWg Do026240.1 48 VRVWSEADEVRILEGLAAHAAAHGAPPGRSQLHAALEGRGLDKAEFTVTEIYEKVRRLRTKYGNLRAAggPPAPAAGGADDGDEVRKYELSAAIWG 143 69**********************987774444444457788999******************999984322233334556666778999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.1E-17 | 48 | 143 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSSPPQSPHA AYLVLPAADA AGEKAPRPAP QPRAAAGGGG KRPAVGVVRV WSEADEVRIL 60 EGLAAHAAAH GAPPGRSQLH AALEGRGLDK AEFTVTEIYE KVRRLRTKYG NLRAAGGPPA 120 PAAGGADDGD EVRKYELSAA IWGDQPLNVA KKQGSTSARV VPPPEAGGGG TSTRVRRGFQ 180 ELQGLFPCLA VEVERITSEN DKTVGPVLKR AFGLISDQEA GVLDAKVKKQ RVKEVQARMN 240 QTTLRDEVLK MLIKSMECGK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do026240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974990.1 | 1e-115 | probable transcription factor At1g61730 | ||||
TrEMBL | A0A1E5VIY7 | 0.0 | A0A1E5VIY7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J29943.1.p | 1e-117 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14621 | 9 | 9 |