PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do026228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 115aa MW: 12891.8 Da PI: 4.4721 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 75.4 | 1e-23 | 1 | 115 | 142 | 253 |
GRAS 142 lRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsP 236 ++iT++g p++g + ++e+tg+rL++fA+++gvpf+f+ ++ ++e++ +++L+++p+E+l+Vn + +++d+ + ++s +rd +L+ ++++ P Do026228.1 1 MKITVIGLPQPGfrPAAQIEQTGRRLSDFARKCGVPFKFHS-IVAEWETVCVDDLDIEPDEVLIVNGLFYFGKVMDDGGGIDSpsPRDMLLNNIQKMHP 98 59*********999***************************.6999*******************************999988779************* PP GRAS 237 kvvvvveqeadhnsesF 253 +v++++ +++++n++ F Do026228.1 99 DVFILCIENSSYNAPFF 115 ************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 3.5E-21 | 1 | 115 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 17.654 | 1 | 115 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MKITVIGLPQ PGFRPAAQIE QTGRRLSDFA RKCGVPFKFH SIVAEWETVC VDDLDIEPDE 60 VLIVNGLFYF GKVMDDGGGI DSPSPRDMLL NNIQKMHPDV FILCIENSSY NAPFF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do026228.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450068.2 | 9e-57 | scarecrow-like protein 14 | ||||
TrEMBL | A0A1E5VE66 | 6e-80 | A0A1E5VE66_9POAL; Scarecrow-like protein 34 | ||||
STRING | Pavir.J16280.1.p | 1e-56 | (Panicum virgatum) | ||||
STRING | Sb05g027783.1 | 2e-54 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 8e-33 | GRAS family protein |