PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026022.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 335aa    MW: 35997.3 Da    PI: 6.104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026022.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14112163155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Do026022.1 112 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 163
                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-14110167No hitNo description
SuperFamilySSF474591.02E-17111179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.904111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-14112174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPLEAVVFSQ AAGHFGYGRG DSPYAMPWCD LGGGFGDLCA AGDYWDPELD AWAAPAIVGD  60
DWEAASRNDQ SSDASTDQQQ GKKAAPEPAA AAVRRKRRRT KVVKNKEEIE TQRMTHIAVE  120
RNRRRQMNEY LAVLRSLMPP SYAHRGDQAS IVGGAINYVR ELEQLLQSLE AQKSIKNRAA  180
GSMDAAGSSS PFAGFFSFPQ YSTTSAHGCC SSTSLVSSSS NTTNATTNSD ASGGSAESGR  240
PAAVADIEVT MVEGHASLKV LARRRPKQLL KLVAGLHQLC IPPLHLNMTS VDAMVLYTFS  300
LKVEDDSKMG SVEDIATAVH EILGSIQQQE ETAVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498RKRRR
29499RKRRRT
3112123RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420301e-112BT042030.1 Zea mays full-length cDNA clone ZM_BFb0114I01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796362.10.0transcription factor bHLH94-like
SwissprotQ9C7T41e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1E5UXR40.0A0A1E5UXR4_9POAL; Uncharacterized protein
STRINGPavir.J40759.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.12e-36beta HLH protein 71
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]