PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do025993.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 313aa MW: 35109 Da PI: 6.8708 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.3 | 2.2e-51 | 28 | 160 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrF P+dee++++yL +kv+++++++ +i evd +++ePw+L ++k +ekewyfF+k+d+ky++g+r nrat+sgyWkatgkdke+++++ + Do025993.1 28 LPPGFRFYPRDEEIITFYLMPKVHQRNFTC-AIIGEVDFNRTEPWELSGNAKIGEKEWYFFCKKDRKYTKGTRMNRATESGYWKATGKDKEIYTSTIGA 125 79**************************99.88**************9888999****************************************73333 PP NAM 100 .....vglkktLvfykgrapkgektdWvmheyrle 129 +g+kktLvfykgrapkgekt W+mhe+rle Do025993.1 126 vfpllIGMKKTLVFYKGRAPKGEKTYWIMHEFRLE 160 56777***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-58 | 25 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.921 | 28 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 29 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
LLVILRAMGE HPEQPQGMNG GSDGGLELPP GFRFYPRDEE IITFYLMPKV HQRNFTCAII 60 GEVDFNRTEP WELSGNAKIG EKEWYFFCKK DRKYTKGTRM NRATESGYWK ATGKDKEIYT 120 STIGAVFPLL IGMKKTLVFY KGRAPKGEKT YWIMHEFRLE GNGRLPCPTS SSTSSTTMKS 180 CASEDDWVVC RVFRKTTGRA HALPPYNLAM ASDRIDKRSI PVPMPLQFPM LSDFTMDPVA 240 SYYSTIGASS AGMDSVGLHI NNTLFGNTMA MAPAMSFYHQ MDMGAASIND FMAAPEDQTF 300 VDGVTDEGHR DEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-48 | 26 | 197 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-48 | 26 | 197 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-48 | 26 | 197 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-48 | 26 | 197 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-48 | 26 | 197 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 7e-48 | 26 | 197 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 7e-48 | 26 | 197 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 7e-48 | 26 | 197 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 7e-48 | 26 | 197 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 7e-48 | 26 | 197 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 7e-48 | 26 | 197 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 7e-48 | 26 | 197 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 7e-48 | 26 | 197 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 7e-48 | 26 | 197 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do025993.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801540.1 | 1e-132 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9FLJ2 | 8e-64 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1E5UP53 | 0.0 | A0A1E5UP53_9POAL; NAC domain-containing protein 100 (Fragment) | ||||
STRING | Pavir.Eb00839.1.p | 1e-140 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-65 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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