PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025927.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 262aa    MW: 27634.9 Da    PI: 7.0955
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025927.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.44.6e-33111022102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y ++ed+ ++ +i ws+ +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll++i 
    Do025927.1  11 FVGKTYMMVEDPGTDGVIGWSRGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLLRNIV 98 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ s
    Do025927.1  99 RRGS 102
                   *976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.4E-527100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.2E-378100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.26E-338100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.3E-2911100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-181134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-184961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAATGGAAAP FVGKTYMMVE DPGTDGVIGW SRGNNSFVVA DPFVFSQTLL PAHFKHNNFS  60
SFVRQLNTYG FRKVDPDRWE FAHASFLRGQ THLLRNIVRR GSSGAGGGGG GGKRKDAAAA  120
ASSTELTGED MAMVATEVVR LKQEQRAIDD RVASMWRRVQ ETERRPKQML AFLLKVVGDR  180
DRLHRLVGDG PAPDGGAEPA AVEGGEKRAR LLLDGDGMGA FGPDAVDFAG FYTSGGAFGD  240
VAVDAAAGSG AGAFAFGVDT GY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-25110311123Heat shock factor protein 1
5d5u_B1e-25610019129Heat shock factor protein 1
5d5v_B1e-25610019129Heat shock factor protein 1
5d5v_D1e-25610019129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9597410.0EU959741.1 Zea mays clone 219739 heat shock factor protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965592.11e-150heat stress transcription factor C-2b
SwissprotQ0DBL61e-120HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A1E5UP990.0A0A1E5UP99_9POAL; Heat stress transcription factor C-2b
STRINGGRMZM2G118047_P011e-137(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.17e-58heat shock transcription factor C1