PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do025919.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

BES1

Protein Properties

Length: 354aa MW: 37403.2 Da PI: 7.8351

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do025919.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	209.8	7.3e-65	12	160	2	148
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslqssl 98 g++r ptw+ErEnn+rRERrRRaiaaki+aGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e+++ +g+sas sp+ss+q Do025919.1 12 GGTRVPTWRERENNRRRERRRRAIAAKIFAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPTaaERHDPIGRSASPSPCSSYQ--- 107 789**********************************************************************9999*************... PP DUF822 99 kssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148 +sp++sy++sp+sssfps+ s+++i+l + +sl+p+l++ls++ss Do025919.1 108 -----PSPRASYNPSPASSSFPSSGSSSHITLGGNnfiggvegSSLIPWLKNLSSSSS 160 .....9********************9998899*9*******998655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.6E-70	12	156	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MTNGAGGGGG LGGTRVPTWR ERENNRRRER RRRAIAAKIF AGLRAYGNYN LPKHCDNNEV 60 LKALCNEAGW TVEPDGTTYR KGCKPTAAER HDPIGRSASP SPCSSYQPSP RASYNPSPAS 120 SSFPSSGSSS HITLGGNNFI GGVEGSSLIP WLKNLSSSSS IASSSKFPQL HHLYFNGGSI 180 SAPVTPPSSS PTRTPRIKTD WENPSVQPPW AGSNYASLPN SQPPSPGHQV APDPAWLAGF 240 QISSAGPSSP TYSLVAPNPF GIFKETIAST SRMCTPGQSG TCSPVMGGMP IHHDVQMVDG 300 APDDFAFGSS SNGNNESPGL VNAWEGERIH EECASDEHEL ELTLGSSKTR ADPS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MTNGAGGGGG LGGTRVPTWR ERENNRRRER RRRAIAAKIF AGLRAYGNYN LPKHCDNNEV  60
LKALCNEAGW TVEPDGTTYR KGCKPTAAER HDPIGRSASP SPCSSYQPSP RASYNPSPAS  120
SSFPSSGSSS HITLGGNNFI GGVEGSSLIP WLKNLSSSSS IASSSKFPQL HHLYFNGGSI  180
SAPVTPPSSS PTRTPRIKTD WENPSVQPPW AGSNYASLPN SQPPSPGHQV APDPAWLAGF  240
QISSAGPSSP TYSLVAPNPF GIFKETIAST SRMCTPGQSG TCSPVMGGMP IHHDVQMVDG  300
APDDFAFGSS SNGNNESPGL VNAWEGERIH EECASDEHEL ELTLGSSKTR ADPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	3e-24	15	89	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	3e-24	15	89	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	3e-24	15	89	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	3e-24	15	89	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do025919.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813584.1	0.0	protein BZR1 homolog 3
Swissprot	Q5Z9E5	0.0	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A1E5VA88	0.0	A0A1E5VA88_9POAL; Protein BZR1-like protein 3
STRING	Pavir.J05652.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	2e-61	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]