PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do025846.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 358aa MW: 35594.3 Da PI: 8.6691

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do025846.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	61	122	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Do025846.1 61 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 122 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	57	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	63	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MEEMLMAANA GAAANTGQGG SNPNPPAPAP SSVPGGGALR GGAPQAVAGA GSTERRARPQ 60 KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS 120 SSSSASASTS ASVTSSSMAS TAGAAPKNPK LAHEGAHDLN LAFPHHGGLH APEFSAFPSL 180 ESSSVCNSGG AMASNGRGGG GGAVPAVGAL SAMELLRSSG CYMPLQMPMP MPGDYAAAGF 240 ALGEFRAPPP PPPPSQSVLG FSLDAHGAGH GAAPAGYGSS AGLSENAGRL LFPFEDLKPP 300 VSSGGGGVAA GASGGASDGN SGHPQFDHHK EQGGGGPSAG HDTPGFWNGM IGGSGASW

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MEEMLMAANA GAAANTGQGG SNPNPPAPAP SSVPGGGALR GGAPQAVAGA GSTERRARPQ  60
KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS  120
SSSSASASTS ASVTSSSMAS TAGAAPKNPK LAHEGAHDLN LAFPHHGGLH APEFSAFPSL  180
ESSSVCNSGG AMASNGRGGG GGAVPAVGAL SAMELLRSSG CYMPLQMPMP MPGDYAAAGF  240
ALGEFRAPPP PPPPSQSVLG FSLDAHGAGH GAAPAGYGSS AGLSENAGRL LFPFEDLKPP  300
VSSGGGGVAA GASGGASDGN SGHPQFDHHK EQGGGGPSAG HDTPGFWNGM IGGSGASW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do025846.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582413	0.0	KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824656.1	1e-158	dof zinc finger protein 1-like isoform X1
Swissprot	Q9SXG8	1e-121	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A1E5V2Q2	0.0	A0A1E5V2Q2_9POAL; Dof zinc finger protein DOF4.6
STRING	Si010443m	1e-156	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-42	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]