PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do025833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bZIP | ||||||||
Protein Properties | Length: 417aa MW: 43214.9 Da PI: 4.8094 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.5 | 2.9e-13 | 225 | 273 | 5 | 53 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 + +rrkq+NRe+ArrsR RK a + eLe v++L eN++L +l + Do025833.1 225 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVN 273 679**************************************98886655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-15 | 221 | 285 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.07 | 223 | 278 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-9 | 224 | 276 | No hit | No description |
Pfam | PF00170 | 3.1E-10 | 225 | 273 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.69E-9 | 225 | 274 | No hit | No description |
Pfam | PF12498 | 1.8E-49 | 292 | 410 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MERVFSVEEI PNPYWAPPHP QAAATGAVPP LGGGGGGGVG GVGDDGAGAM NRCSSEWYLQ 60 KFLEEAVLDS PGPVAGVGRG GGVVGAEAAE SKPLGVAAAA AASSAAVDPV EFNAMLKQKL 120 EKDLAAVAMW RASSATPPER SVAGSSLPNV DVSHAGPINP IGGNGIPVQN KLAVAPVGGS 180 GLQVVQNADI LVKQATSSSS REQSDDDDME GEAETTGNAN PVQQRLQRRK QSNRESARRS 240 RSRKAAHLNE LEAQVAQLRV ENSSLLRRLA DVNHKFNEAA VDNRVLKADV ETLRAKVKMA 300 EDSVKRVTGM NALFPAVSDI SSLSMPFNGS PSDSTSDAAV PTQDDPNSYF ASPSEIGVNN 360 GYMPEIASSA QEDEDLVNAA LAAAGKMDRT DSLQRVASLE HLQKRMCGGP ASSGSTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do025833.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981429.1 | 0.0 | bZIP transcription factor RISBZ2 isoform X1 | ||||
Refseq | XP_022679227.1 | 0.0 | bZIP transcription factor RISBZ2 isoform X2 | ||||
Swissprot | Q7X9A8 | 0.0 | RSBZ2_ORYSJ; bZIP transcription factor RISBZ2 | ||||
TrEMBL | A0A1E5WG51 | 0.0 | A0A1E5WG51_9POAL; Light-inducible protein CPRF2 | ||||
STRING | Pavir.J01091.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3488 | 38 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.2 | 2e-40 | bZIP family protein |
Publications ? help Back to Top | |||
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