PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do025696.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 280aa MW: 29995.9 Da PI: 7.4286

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do025696.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.1	9.1e-31	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+++p++ p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q+++e Do025696.1 2 SCNGCRVLRKGCSDKCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQAAVES 100 6***********************99******************************************************************998 PP DUF260 95 allk 98 +l++ Do025696.1 101 VLRG 104 8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.483	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MSCNGCRVLR KGCSDKCAIR PCLQWIRSPD AQGNATVFLA KFYGRAGLIN LITAGPEHVR 60 PAIFRSLLYE ACGRMLNPVY GSVGLLWSGN WQLCQAAVES VLRGMPIAQP PAAATAVPPL 120 RTCDIRHVAR REDHGGAVAA GLHRIANSSR GQFKRSSAHR SSAGSDSGIE LVFSQPSAAM 180 LVDVRQAQPL NWAPCQPSHD AVPETDSDAS VDTVDVSHVS QSEPAEPPRE NDERADGLDL 240 TLGLPPTARK IEPSDIDDGQ PCHRGEPVKL GLAIADSRTR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do025696.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100502	1e-145	FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818644.1	1e-166	LOB domain-containing protein 42-like
TrEMBL	A0A1E5VTJ5	0.0	A0A1E5VTJ5_9POAL; LOB domain-containing protein 41
STRING	GRMZM2G132693_P01	1e-158	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-65	LOB domain-containing protein 41