PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025519.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 325aa    MW: 34367.9 Da    PI: 7.1171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025519.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.7e-15163209455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Do025519.1 163 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATKYVKELQ 209
                 699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.05159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12163209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-18163217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17163217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-15164213No hitNo description
SMARTSM003534.5E-16165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEDSSLFMQW AMNTLRHEQP AAGAVNDACS EATFPSLQAL REASHAAEMV QELIAEAPAN  60
SWSSGDTTGG SSGGNNSASA AMDHDAWPAT PNSARRAPSR SGTNPPVSWN FGAASVLPGS  120
DVILAAEAAP TRRLPPDLVC GSPPTRRAGV KSAGSMSTPY AQDHIIAERK RREKINQRFI  180
ELSTVIPGLK KMDKATILSD ATKYVKELQG KLKDLEAGGS NGRSIETVVL VKRPCLHAAA  240
APDDDGSPLS VSSGTPAARK QLPEIEARFS DKSVMVRINC ENGKGVAVKV LTEVEELRLS  300
IIHANVMPFS VGTLIITITA KASFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERKRRE
2168173RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795850.10.0transcription factor NAI1-like isoform X2
TrEMBLA0A1E5V4B30.0A0A1E5V4B3_9POAL; Transcription factor bHLH25
STRINGSi039325m1e-175(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-41bHLH family protein