PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do025502.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GATA | ||||||||
Protein Properties | Length: 222aa MW: 24093.8 Da PI: 7.6812 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 42.5 | 9.2e-14 | 173 | 207 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C+nCg ++ Tp++Rrgp+g +t CnaCGl+++k+ Do025502.1 173 CANCGESSeaTPMMRRGPNGCRTFCNACGLMWAKT 207 ********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 11.195 | 69 | 104 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.9E-6 | 73 | 98 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 8.661 | 106 | 149 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.9E-11 | 106 | 149 | IPR010402 | CCT domain |
SMART | SM00401 | 2.7E-5 | 167 | 220 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-7 | 170 | 212 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.0E-12 | 173 | 207 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.44E-10 | 173 | 222 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 173 | 200 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.3E-11 | 173 | 207 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MQQRSPSPSP SAAATGGGGG EEEDPFYDIV IPPEYLLPGL DGDDWCAYGG AALDADEDDG 60 RQRQQGGGDG GEAERLSMTY QGKAYVFDSV PPQKVQPIVV PRDFDRTAAV SRYREKRKST 120 LKFDVKADYS IRREIASRIA RRRGKFVSSD KSSEYPVAAA LRRHGEATEI EWCANCGESS 180 EATPMMRRGP NGCRTFCNAC GLMWAKTVRK ITNPACGGGG GR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do025502.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828797.1 | 5e-54 | GATA transcription factor 20-like | ||||
TrEMBL | A0A1E5W744 | 1e-161 | A0A1E5W744_9POAL; Uncharacterized protein | ||||
STRING | Si027518m | 5e-62 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15880 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-15 | ZIM-like 1 |