PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025459.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 301aa    MW: 33209 Da    PI: 6.4414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025459.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-1499150155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r +h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  Do025459.1  99 QRITHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 150
                 799***************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-1497154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-1597154No hitNo description
PROSITE profilePS5088816.1298149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-1898169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-1299150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MALLDAVVYP QPQGHFGYGH RDASYGLPWS DATGFSEWDP FLLASLVQNA EEFGEEVGSK  60
SSPDHDAAPS AVDPSPVTTT KRKRRRAKVV KNEEEIESQR ITHIAVERNR RRQMNEYLAV  120
LRSLMPPSYA QRGDQASIVG GAINYVRELE QLLQSLEVQR SLKEHNHNSS NPFAGFFSFP  180
QYSTTSASHG GAGNHTTKEE ASDRSPQSSW ITADIEASMV DGHTSVKVQA RRRPRQLLRL  240
AAGLQQLGLT TLHLNVSTAG TMVMYSFSLK VEDECKLSSV EEIAAAVHDI LGRVQEEAGF  300
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085KRKRRR
28185RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025459.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983211.10.0transcription factor bHLH96
SwissprotQ9C7T44e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1E5WHQ80.0A0A1E5WHQ8_9POAL; Transcription factor bHLH96
STRINGPavir.Ib02778.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]