PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do025440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25852.1 Da PI: 6.5183 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.1 | 1.3e-24 | 10 | 55 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 rien rqvtfskRr g++KKAeEL vLCda+va+++fs tgkl Do025440.1 10 RIENAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSATGKLS 55 8*******************************************95 PP | |||||||
2 | K-box | 42.7 | 2.4e-15 | 82 | 157 | 13 | 88 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 + + q ++ L +++ + r +R++ Ge+Le Ls++eL+q+e++Le +l+++ +K++l+++qi+elq+k+ l+ Do025440.1 82 DLNVEQSRYSVLDEQLVEASRGLRQMRGEELEGLSVEELHQMERKLEAGLQRVLITKDRLFMQQISELQQKNFHLS 157 4445577788888888888899*************************************************87665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.198 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.85E-25 | 1 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-24 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.821 | 83 | 180 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.2E-13 | 86 | 157 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MARERREIRR IENAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSA TGKLSHMNDI 60 IDKYSTHSKN LGKSHQQQTS IDLNVEQSRY SVLDEQLVEA SRGLRQMRGE ELEGLSVEEL 120 HQMERKLEAG LQRVLITKDR LFMQQISELQ QKNFHLSNGS KWHIYNSVLN YFWMQMPQMP 180 TAGTAVVAAD TENVLTEDGQ SSESVMTNVH SGSSHDNDDG SDISLKLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-15 | 1 | 83 | 1 | 84 | MEF2C |
5f28_B | 6e-15 | 1 | 83 | 1 | 84 | MEF2C |
5f28_C | 6e-15 | 1 | 83 | 1 | 84 | MEF2C |
5f28_D | 6e-15 | 1 | 83 | 1 | 84 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do025440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ430635 | 1e-123 | AJ430635.1 Zea mays partial mRNA for putative MADS-domain transcription factor (m21 gene). | |||
GenBank | BT041585 | 1e-123 | BT041585.1 Zea mays full-length cDNA clone ZM_BFb0012I22 mRNA, complete cds. | |||
GenBank | EU964232 | 1e-123 | EU964232.1 Zea mays clone 277135 MADS-box transcription factor 22 mRNA, complete cds. | |||
GenBank | EU967223 | 1e-123 | EU967223.1 Zea mays clone 300498 mRNA sequence. | |||
GenBank | KJ726918 | 1e-123 | KJ726918.1 Zea mays clone pUT3463 MADS transcription factor (MADS74) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964865.1 | 1e-122 | MADS-box transcription factor 55 | ||||
Swissprot | Q69TG5 | 9e-95 | MAD55_ORYSJ; MADS-box transcription factor 55 | ||||
TrEMBL | A0A1E5UQD5 | 1e-168 | A0A1E5UQD5_9POAL; MADS-box transcription factor 55 | ||||
STRING | Pavir.Da01333.1.p | 1e-120 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.2 | 6e-27 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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