PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025298.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 270aa    MW: 28902.9 Da    PI: 5.911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025298.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-1162105755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +Er RR+++N+++  Lr+++P+      +K++Ka i + A+ Y+ +Lq
  Do025298.1  62 VMERGRRRKLNEKLYALRSVVPNI-----TKMDKAFIIRDAIAYVEHLQ 105
                 68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-1654120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.08755104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1462119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-962105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.48E-1262109No hitNo description
SuperFamilySSF550216.18E-5187256No hitNo description
CDDcd048730.00434189247No hitNo description
Gene3DG3DSA:3.30.70.2605.4E-4200257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVRSLVGGSS IYDVPPSEAE SLSGLCSSYA PADSSSPDGA NSCSTPPVVV SPPPAVVTRN  60
MVMERGRRRK LNEKLYALRS VVPNITKMDK AFIIRDAIAY VEHLQEQERR VLADISALQL  120
SSTAATVKTE DAATGRATDD VEYSFPRRKK MRRAPSSIAF ADDATRSIIT TSPPVQILEV  180
SEAGERVAVV SVRCSRGRDA VSKVCRALEP LGLGIVTASI ATAGDTVVHT MFVETEEMGG  240
ALLKEAILVA LAQLDVTRSS LDKSSCCWDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025298.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667039e-34BT066703.1 Zea mays full-length cDNA clone ZM_BFb0053N17 mRNA, complete cds.
GenBankEU9556209e-34EU955620.1 Zea mays clone 1539722 DNA binding like mRNA, complete cds.
GenBankKJ7280269e-34KJ728026.1 Zea mays clone pUT6163 bHLH transcription factor (bHLH108) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975230.11e-119transcription factor bHLH35 isoform X1
TrEMBLA0A1E5USW30.0A0A1E5USW3_9POAL; Transcription factor bHLH35
STRINGSi010685m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-36bHLH family protein