PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025275.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 333aa    MW: 33999.8 Da    PI: 4.7166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025275.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.4e-091431821155
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Do025275.1 143 LRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 182
                 6******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.402132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-8142187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-13142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-13142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-6143182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.84E-10144186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MQGGGGQDDF FDQMLSTLPA AWSELGSGKS PWELPAGASE DSEAFDESVL LASRLRHHQI  60
GGGGGDKPVM LHLSDLHGLA AAGGEDRGAT GFLPLPLFTD RAREDMDAAF KSPNAAGGDQ  120
ALYNGFGTAG MHAAAVQPPF GQLRRERIAE RMKALQELVP NANKTDKASM LDEIIDYVKF  180
LQLQVKVLSM SRLGGAAGVS PLVANMSSEG NGSANGTSDS GDGNAANGGS NGENGGSSLK  240
VTEQQVARLM EEDMGTAMQY LQGKGLCLMP ISLASAISSA TSSSLLSRPS IGSMGAARGP  300
LHDGGSPASP PLVNGAGGDD SRTIKDAGAG GKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025275.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151181.11e-160uncharacterized protein LOC100284814
TrEMBLA0A1E5W8J70.0A0A1E5W8J7_9POAL; Transcription factor bHLH69
STRINGPavir.Ab03158.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-48LJRHL1-like 2