PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025184.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 273aa    MW: 29333.8 Da    PI: 4.2281
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025184.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS27.92.9e-09207267183241
        GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvv 241
                  +r+e++++++L+++p+E+l+Vn++l+  +l+de v+ +s  +rd vL+ +++++P v+++
  Do025184.1 207 RRRWETVTIDDLDIDPDEVLIVNSILHFGNLMDEGVDASSpsPRDVVLSNIRKMRPGVFIL 267
                 4699******************************988877779***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035149.9E-7207267IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MLMEMDIDDQ FFYQFPDHPA LLQAQEAYAQ ILSGAATARS SDDPVHLSLL PRSPTCSDIV  60
LDNFTANDVG ALFLPAQDGT SAGVEQSPVK FGTAGDANAF FACRYDGSAC VQSSAFLNIA  120
DEQSLAQLRS TTFPAGDGDH AALASAFFSG QNGENMDNKA FLKGMPEANK FFPTSNTASS  180
STVRPPPGNT CLDTTIGRVL SPPTKIRRRW ETVTIDDLDI DPDEVLIVNS ILHFGNLMDE  240
GVDASSPSPR DVVLSNIRKM RPGVFILFVM NGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826966.13e-58scarecrow-like protein 30
TrEMBLA0A1E5URE90.0A0A1E5URE9_9POAL; Uncharacterized protein
STRINGPavir.Hb00043.1.p2e-51(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.12e-13GRAS family protein