PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do025061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 709aa MW: 78023.1 Da PI: 4.6528 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.1 | 1.8e-45 | 10 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 ppGfrF+Ptdeelv ++Lk+++ + + + +++vd+yk++P++Lp + +++++++w+fFs+ d+ky++g+r++r+t +gyWkatgkd+ ++ +g+ Do025061.1 10 PPGFRFSPTDEELVLYFLKRRIYSGRPSP--YVADVDVYKSHPSHLPeRsVLQTGDRQWFFFSRMDRKYPNGSRASRTTGDGYWKATGKDRFICG-GGR 105 8********************99998655..69*************95347788999*************************************9.99* PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg kktLv+++grap+ge+tdWvmhey+l Do025061.1 106 AVGNKKTLVYHHGRAPRGERTDWVMHEYTL 135 ****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-52 | 7 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.285 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-24 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MEAPPPRRWP PGFRFSPTDE ELVLYFLKRR IYSGRPSPYV ADVDVYKSHP SHLPERSVLQ 60 TGDRQWFFFS RMDRKYPNGS RASRTTGDGY WKATGKDRFI CGGGRAVGNK KTLVYHHGRA 120 PRGERTDWVM HEYTLLADVL PPAAEGRESY ALYKLFQKSG SGPKNGEQYG APFREEDWLD 180 DNEEGVTTDA APNSVPNTNN CPPTAEEHAI ADRELPIEDL DELLSQIGND QELFGEAHSD 240 FSTPVTSHGQ GHGWLSDGGD KTEVADASIS SSAVVVAVNT CTDLPLGDIE QLLMQMSDDQ 300 QNAELFSDFS TPVPQQQLQC DNHQVWLDAH RGQEVCAADP TASSVAVVTT ECADTELPFG 360 DLEGLLLPIA IDRDMVEPLS HLSVPIPHHN FNQVGIGDFH ESHGAPVGNL SCIVQESTFD 420 LQTVLRSQIP QSNLTNVPFR GETNSSEATS VSHSVSGYNQ DANEEFLEIN DFFDLEDVEQ 480 SANCTATEHL ISATNGMFDN LEYSDAPTFL PGPFDTAGVV PENQFFDFGN SGIQNQGYQY 540 TTEVRAHNQA ALNVRSHMKD NHVVLSSHAS GTLNLHVGNE PPNRSSTASQ SWFNAALSAL 600 LDSVPSSPAL AAEIENTVIN RTLQRISSFR SHQAAGEENT VINRTLQRIS SFRSQQAASE 660 EPSTPRIQVT RGGRLMSISL LVILAAFMWT FTAGSALKFC KGLWKSSFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-43 | 10 | 135 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do025061.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802095.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A1E5UTD4 | 0.0 | A0A1E5UTD4_9POAL; NAC domain-containing protein 16 | ||||
STRING | Si029088m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 2e-68 | NAC domain containing protein 16 |