PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do024877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 169aa MW: 19020.9 Da PI: 10.9018 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.2e-08 | 78 | 124 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 WT++E lvd+v + G g W+++ Rt+ ++k++w+++ Do024877.1 78 HWTEDEMVELVDGVSKKGIGKWSKVKGDYFstSIRTAVHLKDKWRNL 124 6************************999888988***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.067 | 71 | 129 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.74E-13 | 73 | 136 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-10 | 73 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0019 | 75 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-5 | 78 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.63E-16 | 79 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MLLDTVASTT YSSPGGSLAD RYGRPIKEDS VAESTDKAIT IVGPFGHNPN PVEVSQLFGS 60 QYPCTGGRKC RSRKNNDHWT EDEMVELVDG VSKKGIGKWS KVKGDYFSTS IRTAVHLKDK 120 WRNLVRACKA KTTSKRKVNI QKATELIVRR FRRRILAIEA KRLGIKKRK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 151 | 168 | RRRILAIEAKRLGIKKRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do024877.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5VTU2 | 1e-121 | A0A1E5VTU2_9POAL; Uncharacterized protein | ||||
STRING | Sb01g020800.1 | 4e-59 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72650.1 | 3e-14 | TRF-like 6 |