PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do024794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Dof | ||||||||
Protein Properties | Length: 317aa MW: 33305.1 Da PI: 9.1861 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.3 | 4.6e-40 | 31 | 90 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCdstntkfCyynnysl+qPryfCkaCrryWtkGG+lrnvPvGgg+rknk++ Do024794.1 31 QDQALNCPRCDSTNTKFCYYNNYSLTQPRYFCKACRRYWTKGGTLRNVPVGGGSRKNKQQ 90 7899******************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 29 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-34 | 32 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.106 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MEVAAAAARN VKAKQAWQQQ AGGERKPRPQ QDQALNCPRC DSTNTKFCYY NNYSLTQPRY 60 FCKACRRYWT KGGTLRNVPV GGGSRKNKQQ RASAASSAPP TSSSSPSGSK KVNNITQQLM 120 MMPTASAMTT TADFSNVLPA FMSTGAGFEL PTSDHHQVSL PFVPLSLSSD PDGGSGAAPL 180 FMDMLRGGFL DSNGLALPFP PLSFGAMPIH GHGSTDQHAT QLVGPLQGVE EVKPMAAAAG 240 GGLQWLSPQH GSINHGGFAA GSAGGVVQKQ EEEVVGDGGR SSSNKNHNNV GGASGGSGRA 300 SEYYDWQRDL INSSSLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do024794.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376388 | 2e-53 | AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18. | |||
GenBank | AM084360 | 2e-53 | AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980592.1 | 2e-90 | dof zinc finger protein PBF | ||||
Swissprot | O24463 | 3e-59 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | A0A1E5UTH7 | 0.0 | A0A1E5UTH7_9POAL; Dof zinc finger protein PBF | ||||
STRING | Si019139m | 1e-89 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-39 | Dof family protein |
Publications ? help Back to Top | |||
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