PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024772.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 127aa    MW: 14414.1 Da    PI: 10.6075
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024772.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-082381147
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     l++++ + +G g+Wk I++++ ++Rt+ q+ s+ +ky
       Do024772.1  2 LFLRGLHVFGHGNWKNISKYFVTTRTPTQVSSHAHKY 38
                     7999*******************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.148143IPR017930Myb domain
PfamPF002491.5E-6238IPR001005SANT/Myb domain
SuperFamilySSF466895.31E-10244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-6240IPR009057Homeodomain-like
CDDcd001671.32E-6239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MLFLRGLHVF GHGNWKNISK YFVTTRTPTQ VSSHAHKYFR RLKSVSHRQR YSINDVGFYD  60
AEPWAQNNTS GWEGSAFIGG SYNPNRYGAS GQHTTINNLA QVRPPILYHT SQVSINNNQA  120
ACTIISR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024772.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966689.11e-53uncharacterized protein LOC101759880
RefseqXP_004967177.11e-53myb-like protein H
TrEMBLA0A1E5WB236e-90A0A1E5WB23_9POAL; Uncharacterized protein
STRINGPavir.J01189.1.p2e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-17MYB family protein