PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024763.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 281aa    MW: 30859.2 Da    PI: 7.0505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024763.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-3192148259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkvers   +++++i+Y+g+Hnh+
  Do024763.1  92 DDGYNWRKYGQKAVKGGEYPRSYYKCTQVSCPVKKKVERSG-GGHITQIIYRGQHNHP 148
                 8***************************************9.***************8 PP
2WRKY35.81.6e-11260281122
                 ---SS-EEEEEEE--TT-SS-E CS
        WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                 ldDgy+WrKYGqK+vkg+++pr
  Do024763.1 260 LDDGYRWRKYGQKVVKGNPHPR 281
                 59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-2784150IPR003657WRKY domain
SuperFamilySSF1182908.63E-2590150IPR003657WRKY domain
SMARTSM007742.6E-3291149IPR003657WRKY domain
PfamPF031062.2E-2392148IPR003657WRKY domain
PROSITE profilePS5081123.46892150IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-13247281IPR003657WRKY domain
SuperFamilySSF1182908.89E-10252281IPR003657WRKY domain
PROSITE profilePS5081116.352255281IPR003657WRKY domain
PfamPF031062.2E-7261281IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
GSFEMSHQQA LAQVTAQAVH SQYNMINHSD YSIPFSSTTR PALTSQHDNP ANVTSTQEIS  60
TLPSHTGNNN VESNEVSQGL QTSTPTFDKP ADDGYNWRKY GQKAVKGGEY PRSYYKCTQV  120
SCPVKKKVER SGGGHITQII YRGQHNHPRP PKRRSKDGGG LLNEADDFHD NEDASTRSEP  180
GSQDHSGKHG GSNDGIAAPS VSRRREGDEQ SSGSSDSEEE ADDEQRVGNG DVGHANANRR  240
HVPTPAQRII VQTTSEVDLL DDGYRWRKYG QKVVKGNPHP R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1780151375WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153RPPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9577240.0EU957724.1 Zea mays clone 1612894 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983974.30.0probable WRKY transcription factor 4 isoform X1
RefseqXP_012698576.10.0probable WRKY transcription factor 4 isoform X2
TrEMBLA0A1E5V3W20.0A0A1E5V3W2_9POAL; Putative WRKY transcription factor 3 (Fragment)
STRINGSi035317m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-49WRKY DNA-binding protein 3