PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024750.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 789aa    MW: 86774.3 Da    PI: 6.2843
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024750.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.63.5e-21148235183
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                 f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F 
  Do024750.1 148 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL 235
                 99*****************************555555669***********************************************6 PP
2Auxin_resp80.73.5e-272423081783
  Auxin_resp  17 PrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  r+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e++++Gt+vg+ ++dp+ W +SkWrsLk
  Do024750.1 242 CRTSPAEFVVSRDRYYESLKRNYSIGMRFKMKFEGEEVAEQKFTGTIVGIGASDPSGWADSKWRSLK 308
                 589**************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-34144244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-18146234No hitNo description
Gene3DG3DSA:2.40.330.102.2E-33146236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.179148255IPR003340B3 DNA binding domain
PfamPF023623.1E-19148235IPR003340B3 DNA binding domain
SMARTSM010195.0E-16148245IPR003340B3 DNA binding domain
PfamPF065074.8E-24241308IPR010525Auxin response factor
PROSITE profilePS5174523.337661745IPR000270PB1 domain
SuperFamilySSF542771.96E-10664737No hitNo description
PfamPF023091.5E-6708745IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MAAAAAAAGG GAAGGGGPEA GVGGGGKDAL FVELWKACAG PLSSVPPLGE KVYYFPQGHI  60
EQVEASTNQL AEQQGTPLYN LPWKIPCKLM NIELKAETDT DEVYAQLTLL PDKKWDENTT  120
TTVESDEAEE VVPEAPPATN EQLGIHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS  180
QHPPNQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLSCLYS  240
SCRTSPAEFV VSRDRYYESL KRNYSIGMRF KMKFEGEEVA EQKFTGTIVG IGASDPSGWA  300
DSKWRSLKVR WDEASSVPRP ERVSPWQIEP AVSPSPVNPL PPRFKRSRSN VNASPSEMST  360
VAREVASKVM ADSQQNSLPR ALHSQGRTQL TSQYRDSSDL KSAQDLTMWS SGIEQERSNI  420
AAQTKLSLEG WTHIRRPEGY NQLLSAFQPL KDAQHPHCSF PSQISGNRSN TWDTVDARYP  480
VPQGNRHMLP GTWSLMPPNT GFRMNQQNYL SMPEAALSQR AEIAKFSGKS AFTSLQGHGI  540
DQSSGWFGPI ESNSLIDRAS SSLIKPQPLV IENDVQKAKC TSLKLFGIPL GSPEKSEPLV  600
SPPSVAYDGK LKTSPSERNQ LDIIDVDDCS DPSKTVKLLD GPQSDSVKEN IQNKVQSSST  660
RSCKKVHKQG SALGRSIDLT KFTCYGELIA ELDQMFDFDG ELSSPHKNWL VVYTDNEGDM  720
MLVGDDPWKE FCNMVHKIFI YTREEVERMN PGALSSRSED SLSNSLGRGL GSKEPRGGPS  780
TSSLNSENC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1262333012354Auxin response factor 1
4ldy_B1e-1262333012354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962662.10.0auxin response factor 24
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLA0A1E5VQX90.0A0A1E5VQX9_9POAL; Auxin response factor
STRINGSi021216m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]