PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do024644.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 26653.9 Da PI: 9.8184 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.1 | 4.4e-10 | 87 | 132 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+ Rd++N +f eLr +P+ +++K++ L + YI++L Do024644.1 87 SHVEAERQCRDKLNRRFCELRAAVPTV-----SRMDKVSLLADVAAYISEL 132 799***********************6.....49***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.427 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-13 | 86 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.59E-9 | 87 | 137 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.8E-14 | 87 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 87 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-8 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MLVPPRRPWI APHGKLSLPA SFFSTAGHHQ ELDFVSSEVL EQWLGSEDCL DGTAWGDNGL 60 SGGQPPAPAP KKRGRKPGPR TNGPPISHVE AERQCRDKLN RRFCELRAAV PTVSRMDKVS 120 LLADVAAYIS ELRDRVKQLE AEAKQAAAVT VVALVHSSPG VLEKLEVRMV VWQEAAALRL 180 TTTTARHTPA LLMLALRSLD LPVLHACVCR VVGGVTVQDA VVDVPAAALR DKRRLRHALF 240 CRLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-18 | 85 | 145 | 6 | 66 | Transcription factor MYC2 |
5gnj_B | 8e-18 | 85 | 145 | 6 | 66 | Transcription factor MYC2 |
5gnj_E | 8e-18 | 85 | 145 | 6 | 66 | Transcription factor MYC2 |
5gnj_F | 8e-18 | 85 | 145 | 6 | 66 | Transcription factor MYC2 |
5gnj_G | 8e-18 | 85 | 145 | 6 | 66 | Transcription factor MYC2 |
5gnj_I | 8e-18 | 85 | 145 | 6 | 66 | Transcription factor MYC2 |
5gnj_M | 8e-18 | 85 | 145 | 6 | 66 | Transcription factor MYC2 |
5gnj_N | 8e-18 | 85 | 145 | 6 | 66 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do024644.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444645.1 | 3e-85 | transcription factor bHLH14 | ||||
TrEMBL | A0A1E5USC9 | 1e-176 | A0A1E5USC9_9POAL; Uncharacterized protein | ||||
STRING | Sb07g025330.1 | 1e-84 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 3e-15 | bHLH family protein |