PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do024632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 536aa MW: 57480.6 Da PI: 9.182 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3.2e-15 | 26 | 70 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT++ de l+ +v+ +G + W+ I ++++ gR +kqc++rw +yl Do024632.1 26 PWTEDKDEALKTLVTIHGEKKWSVIQHHLP-GRIGKQCRERWTNYL 70 8*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 192 | 238 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede l+ +v+ +G++ W++Ia+ ++ gR +kqc++rw ++l Do024632.1 192 KGPWTEQEDEALKALVAYHGMKKWAAIAKSIP-GRIGKQCRERWTNHL 238 79******************************.************996 PP | |||||||
3 | Myb_DNA-binding | 49 | 1.4e-15 | 248 | 288 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+++de+l+ a+k +G++ W+ Iar + gR+++++k++w+ Do024632.1 248 IWTEQDDEQLIMAHKIHGNR-WSMIARDLY-GRSENSVKNHWN 288 6*******************.********9.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.043 | 19 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-20 | 23 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 23 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-13 | 26 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.58E-16 | 26 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.67E-14 | 26 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 187 | 240 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.186 | 187 | 242 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-17 | 191 | 240 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-29 | 191 | 287 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-16 | 192 | 238 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.48E-15 | 194 | 238 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-15 | 241 | 292 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.19 | 243 | 295 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 245 | 293 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.72E-11 | 249 | 291 | No hit | No description |
Pfam | PF00249 | 1.9E-12 | 249 | 288 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MPNAVLRAAG WRVAVAGVQR QPRASPWTED KDEALKTLVT IHGEKKWSVI QHHLPGRIGK 60 QCRERWTNYL RPNIDKPRAR GADMEGGSSV GFGHGVAAGP VHPRYSGGGT GAQAVMPGAG 120 IIPAGMSTLL FGVGMPAPGG NMVQPGPGGY LAAAGNGAMP LCAGWNRVAG AGAQQQPGRA 180 GGGVINKPPP QKGPWTEQED EALKALVAYH GMKKWAAIAK SIPGRIGKQC RERWTNHLRP 240 NIEKRKDIWT EQDDEQLIMA HKIHGNRWSM IARDLYGRSE NSVKNHWNAT KRSLNSKRRI 300 KKKKNPEARP GQQWSVLEMY IRSQLPDADA KPEAAAPDSP PSSESDDIGY GEVVAPLPQP 360 GFNPAVMGLY LNSAGSSSSA MGLYLNSAGS SSSAMGAAVM NPNVDLGLGL DAYYGAPQQQ 420 PLQAAMNQQQ LMMMGHDQQK AAATSYYANL QMSYHQFVDN LAWHSSVHAE NANAAAHHQP 480 YYYYYYGDAG AGPSGTAGSS GGGSGDDDID VVQMASREFQ LNPTEEEVTL NLAGFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-33 | 188 | 296 | 3 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do024632.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791584.1 | 1e-122 | transcription factor CSA-like | ||||
TrEMBL | A0A2S3IJY2 | 1e-123 | A0A2S3IJY2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J13941.1.p | 1e-94 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 4e-38 | myb domain protein 118 |