PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do024612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 32628.6 Da PI: 9.4647 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v ++G ++W++I r ++ gR++k+c++rw + Do024612.1 11 KGPWSPEEDEALRRLVDRHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 56 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.5e-17 | 63 | 106 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eEd ++ a+++lG++ W++Iar ++ gRt++ +k++w++ Do024612.1 63 RRPFTPEEDAAILAAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 106 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.452 | 6 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-16 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-25 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.07E-15 | 13 | 55 | No hit | No description |
SMART | SM00717 | 5.6E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.861 | 63 | 112 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.7E-15 | 63 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-12 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 65 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MGVESECDRI KGPWSPEEDE ALRRLVDRHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ 60 VERRPFTPEE DAAILAAHAR LGNRWAAIAR LLPGRTDNAV KNHWNSSLKR KLVTATATSA 120 AEAGAGEAER PCKRASPGPG SPTGSDRSEL SHGSAGSGGG AQVFRPVPRA GGFDAIATAD 180 VRPLAPPPRR DEDPLTSLSL SLPGLDHQSS PAGFHHDSAR SQFQELSPSR SPSPPSPPSS 240 SSATAAYPFS GELVAAMQEM IRAEVRKYMS GAGLRAGCGP GAVGEACMPQ LVEGVMRAAA 300 ERVGAVVTRP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-41 | 8 | 114 | 4 | 110 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00653 | PBM | Transfer from LOC_Os02g09480 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do024612.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147631.1 | 1e-167 | uncharacterized protein LOC100281240 | ||||
TrEMBL | A0A1E5USI7 | 0.0 | A0A1E5USI7_9POAL; Transcription factor MYB44 | ||||
STRING | GRMZM2G145444_P01 | 1e-166 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67300.1 | 7e-64 | myb domain protein r1 |