PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024612.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 310aa    MW: 32628.6 Da    PI: 9.4647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024612.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v ++G ++W++I r ++ gR++k+c++rw + 
       Do024612.1 11 KGPWSPEEDEALRRLVDRHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 56
                     79******************************.***********985 PP

2Myb_DNA-binding55.31.5e-1763106146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eEd  ++ a+++lG++ W++Iar ++ gRt++ +k++w++
       Do024612.1  63 RRPFTPEEDAAILAAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 106
                      679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.452661IPR017930Myb domain
SuperFamilySSF466894.87E-318104IPR009057Homeodomain-like
SMARTSM007176.7E-161059IPR001005SANT/Myb domain
PfamPF002491.4E-171156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-251264IPR009057Homeodomain-like
CDDcd001673.07E-151355No hitNo description
SMARTSM007175.6E-1662110IPR001005SANT/Myb domain
PROSITE profilePS5129421.86163112IPR017930Myb domain
PfamPF002493.7E-1563106IPR001005SANT/Myb domain
CDDcd001671.14E-1265108No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2465113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGVESECDRI KGPWSPEEDE ALRRLVDRHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ  60
VERRPFTPEE DAAILAAHAR LGNRWAAIAR LLPGRTDNAV KNHWNSSLKR KLVTATATSA  120
AEAGAGEAER PCKRASPGPG SPTGSDRSEL SHGSAGSGGG AQVFRPVPRA GGFDAIATAD  180
VRPLAPPPRR DEDPLTSLSL SLPGLDHQSS PAGFHHDSAR SQFQELSPSR SPSPPSPPSS  240
SSATAAYPFS GELVAAMQEM IRAEVRKYMS GAGLRAGCGP GAVGEACMPQ LVEGVMRAAA  300
ERVGAVVTRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-4181144110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00653PBMTransfer from LOC_Os02g09480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147631.11e-167uncharacterized protein LOC100281240
TrEMBLA0A1E5USI70.0A0A1E5USI7_9POAL; Transcription factor MYB44
STRINGGRMZM2G145444_P011e-166(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.17e-64myb domain protein r1