PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024429.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 450aa    MW: 48304.7 Da    PI: 6.3516
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024429.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.51.2e-110534252374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lLl+cAeav+ ++l++a++lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +++ a+++++ +sP++kfsh+taNq
  Do024429.1  53 LSLLLRCAEAVAMDQLTEARELLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRQLAAAQSRRVAGAFQAYNALSPLVKFSHFTANQ 151
                 689************************************************************************************************ PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl......vakrledlelee 193
                 aI++a++ge+r+H++D+di+qGlQWp L++ LasRp++p slRiTg+g+    s e le+tg+rL +fA++lg+pfef+++      v       +  +
  Do024429.1 152 AIMQALDGEDRLHVVDLDIMQGLQWPGLFHILASRPRKPRSLRITGLGA----SLEVLEATGRRLGDFAASLGLPFEFHPIegkighV------ADAAA 240
                 *************************************************....9**************************95555533......34444 PP

        GRAS 194 L.......rvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...e 280
                 L       + ++  +Ea++V++++  h l+d ++s       +++l++sl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l  ++++++    
  Do024429.1 241 LlgnprhhHQQQqqDEATVVHWMH--HCLYDVTGSDVG----TVRLLRSLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALFDALGDGAGAAEegsA 332
                 43333332322256*********9..889988999998....**********************.899*******************555443333459 PP

        GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 er+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qaklll +++++gy++ ee+++l lgWkd +L+++SaW+
  Do024429.1 333 ERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLAGSPATQAKLLLGMYPWKGYTLVEEDACLKLGWKDLSLLTASAWE 425
                 ************************998887.9*************************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.75926405IPR005202Transcription factor GRAS
PfamPF035144.3E-10853425IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MKAKRAPASP DEEEEGDGRP ARGKRQQLLG GLGSAAAGAA AEEGPETRGL RLLSLLLRCA  60
EAVAMDQLTE ARELLPEIAE LASPFGSSPE RVAAYFGDAL CARVLSSYLG AYSPLALRQL  120
AAAQSRRVAG AFQAYNALSP LVKFSHFTAN QAIMQALDGE DRLHVVDLDI MQGLQWPGLF  180
HILASRPRKP RSLRITGLGA SLEVLEATGR RLGDFAASLG LPFEFHPIEG KIGHVADAAA  240
LLGNPRHHHQ QQQQDEATVV HWMHHCLYDV TGSDVGTVRL LRSLRPKLIT IVEQDLGHSG  300
DFLGRFVEAL HYYSALFDAL GDGAGAAEEG SAERHAVERQ LLGAEIRNIV AVGGPKRTGE  360
VRVERWGDEL RRAGFRPVSL AGSPATQAKL LLGMYPWKGY TLVEEDACLK LGWKDLSLLT  420
ASAWEPADDD AAAAAAAAPA PTPRHGSQET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1555842624379Protein SCARECROW
5b3h_D1e-1555842624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024429.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269610.0KJ726961.1 Zea mays clone pUT3661 GRAS transcription factor (GRAS54) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958062.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-169SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1E5USZ00.0A0A1E5USZ0_9POAL; Scarecrow-like protein 23
STRINGSi032551m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-149GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]