PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do024262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 163aa MW: 19068.6 Da PI: 6.9617 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 45.3 | 1.5e-14 | 88 | 156 | 305 | 373 |
GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +er et+++W+ r ++aG++++pl+++++++++ +++ + +++ ++ ++++l+ Wk+r L+++SaW Do024262.1 88 IVERPETYKQWKVRNHRAGLRQLPLDSDVVNDVRETVKNQYHKEFVIDMDHQWLLEEWKGRILYAISAW 156 479**************************************999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 5.1E-12 | 88 | 156 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MRMSSTPLPT RPRLLGGKNK YNYQDDLEAD KDRNNKLMVS EPEETGEMVD YIIANGYDLC 60 LEKMKDLRIV MDSKAEKNNK KGSARAHIVE RPETYKQWKV RNHRAGLRQL PLDSDVVNDV 120 RETVKNQYHK EFVIDMDHQW LLEEWKGRIL YAISAWVADD ATS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do024262.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826966.1 | 5e-36 | scarecrow-like protein 30 | ||||
TrEMBL | A0A3L6PL53 | 2e-36 | A0A3L6PL53_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ha00318.1.p | 1e-35 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37422 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46600.3 | 2e-23 | GRAS family protein |