PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do024215.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 475aa MW: 51338.8 Da PI: 6.9538

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do024215.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.00072	364	397	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 i +++ L++++ + +K + a++L ++++YIk L Do024215.1 364 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 397 667889999999887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.061	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-7	363	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.86E-4	363	402	No hit	No description
SuperFamily	SSF47459	9.03E-9	363	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MHLHAAGAVH LQYFMPRHQP QEATDLQAQD SSSAVCRRSS SSTSPAATMW AEYHHRAAHA 60 AALQTASSSA SSFPSWSSPY AGTTAALLGA AGSAFATDAS SSPDLRLPAA GEHGHGHAWS 120 QHGEQSNSTC YRENFLDLLA SKNVTQEMFE DVPGGHYAAQ ALPGRLGAGS DAAPIKYEVA 180 GSPLFFGSTT PVMHQQGMNM AGCTPCYPYA DHHQMKEGSN QQQELETPAM TSFLQQLSSN 240 ASVGMHASLD YSGIGLDKIC QEGRAMEGSS FGMRSLPDLS SFSGYRSNAE STSSVQPYLR 300 SSNLSDSSKQ EQDIVSARCS SSGSGAVSDR KKRPSEEKTS TVKKSKQEGS KASPPKQQVP 360 KVKIGEKITA LQQIVSPFGK TDTASVLFET IKYIKFLHEQ VQLLSEPYTN SSRNKGNLPW 420 VVEHAETSKQ GDHQAEHDLR DRGLCLVPVS WTPEVYRDGT AMDYWTPAYR GCLYR

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MHLHAAGAVH LQYFMPRHQP QEATDLQAQD SSSAVCRRSS SSTSPAATMW AEYHHRAAHA  60
AALQTASSSA SSFPSWSSPY AGTTAALLGA AGSAFATDAS SSPDLRLPAA GEHGHGHAWS  120
QHGEQSNSTC YRENFLDLLA SKNVTQEMFE DVPGGHYAAQ ALPGRLGAGS DAAPIKYEVA  180
GSPLFFGSTT PVMHQQGMNM AGCTPCYPYA DHHQMKEGSN QQQELETPAM TSFLQQLSSN  240
ASVGMHASLD YSGIGLDKIC QEGRAMEGSS FGMRSLPDLS SFSGYRSNAE STSSVQPYLR  300
SSNLSDSSKQ EQDIVSARCS SSGSGAVSDR KKRPSEEKTS TVKKSKQEGS KASPPKQQVP  360
KVKIGEKITA LQQIVSPFGK TDTASVLFET IKYIKFLHEQ VQLLSEPYTN SSRNKGNLPW  420
VVEHAETSKQ GDHQAEHDLR DRGLCLVPVS WTPEVYRDGT AMDYWTPAYR GCLYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do024215.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042937	1e-171	BT042937.1 Zea mays full-length cDNA clone ZM_BFc0067L11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953415.1	0.0	uncharacterized protein LOC101779384
TrEMBL	A0A1E5UT91	0.0	A0A1E5UT91_9POAL; Transcription factor bHLH111
STRING	Si017063m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12698	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	2e-41	bHLH family protein