PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024043.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 377aa    MW: 41646.6 Da    PI: 6.1442
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024043.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.7e-10117151843
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      Ede+l + v+++G ++W  Ia+ ++ gR + qc+ r
       Do024043.1 117 EDEILTKMVTKHGLKNWQNIASAIP-GRNGQQCRIR 151
                      9************************.*******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.013105168IPR017930Myb domain
SMARTSM007171.2E-5109158IPR001005SANT/Myb domain
SuperFamilySSF466892.11E-9116160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-11116159IPR009057Homeodomain-like
PfamPF002492.2E-7117151IPR001005SANT/Myb domain
CDDcd001675.91E-9117161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKRKLDSYLT SGLLEQVPDL HENLSVPESS QSDVPKDSKV SSDRNRFSSI SSTRSKLKHE  60
LRELSEIVDT SVGESSDFIY AKALDANVSE SIIAKPQQCA RTRKKLDLVS TPVKLKEDEI  120
LTKMVTKHGL KNWQNIASAI PGRNGQQCRI RTNHALKEHW RGHMKGKLNY YLASGLLEQI  180
PDLQEDLSVP ESNQSDVPKD SQGSSERNPP TSSLPTRPKS KSDLSELDEN DNTSEEESSD  240
SIHPNGLDAH SAKISVKIMA KSKQRARARK KLDFLSTPVE LKVGTAAASC QRPPLKMEQT  300
TPAADNISPS DVCQAIPQNV PSERVDVVIP TAASNHPNDV HSWATQDPCS LEIHEANASD  360
FLDMSYCDGL MIDFLDI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683272.10.0snRNA-activating protein complex subunit 4 isoform X4
RefseqXP_022683273.10.0snRNA-activating protein complex subunit 4 isoform X4
RefseqXP_022683278.10.0snRNA-activating protein complex subunit 4 isoform X5
TrEMBLA0A1E5VP500.0A0A1E5VP50_9POAL; Uncharacterized protein
STRINGPavir.Aa02683.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142631723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.12e-10myb domain protein 3r-4